MersV1, Main, Exploration, bibRecord, 000318

kmcEx: memory-frugal and retrieval-efficient encoding of counted k-mers.

Identifieur interne : 000318 ( Main/Exploration ); précédent : 000317; suivant : 000319

kmcEx: memory-frugal and retrieval-efficient encoding of counted k-mers.

Auteurs : Peng Jiang [République populaire de Chine] ; Jie Luo [République populaire de Chine] ; Yiqi Wang [République populaire de Chine] ; Pingji Deng [République populaire de Chine] ; Bertil Schmidt ; Xiangjun Tang [République populaire de Chine] ; Ningjiang Chen [République populaire de Chine] ; Limsoon Wong [Singapour] ; Liang Zhao [République populaire de Chine]

Source :

Bioinformatics (Oxford, England) [ 1367-4811 ] ; 2019.

RBID : pubmed:31038666

Abstract

K-mers along with their frequency have served as an elementary building block for error correction, repeat detection, multiple sequence alignment, genome assembly, etc., attracting intensive studies in k-mer counting. However, the output of k-mer counters itself is large; very often, it is too large to fit into main memory, leading to highly narrowed usability.

DOI: 10.1093/bioinformatics/btz299
PubMed: 31038666

Affiliations:

Le document en format XML

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<front><div type="abstract" xml:lang="en">K-mers along with their frequency have served as an elementary building block for error correction, repeat detection, multiple sequence alignment, genome assembly, etc., attracting intensive studies in k-mer counting. However, the output of k-mer counters itself is large; very often, it is too large to fit into main memory, leading to highly narrowed usability.</div>
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kmcEx: memory-frugal and retrieval-efficient encoding of counted k-mers.

kmcEx: memory-frugal and retrieval-efficient encoding of counted k-mers.

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Abstract

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